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» Comparisons of Protein Family Dynamics
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BMCBI
2005
92views more  BMCBI 2005»
13 years 8 months ago
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators
Background: Estimators of free energies are routinely used to judge the quality of protein structural models. As these estimators still present inaccuracies, they are frequently e...
Federico Fogolari, Silvio C. E. Tosatto, Giorgio C...
OSDI
2008
ACM
14 years 9 months ago
A Comparison of High-Level Full-System Power Models
Dynamic power management in enterprise environments requires an understanding of the relationship between resource utilization and system-level power consumption. Power models bas...
Suzanne Rivoire, Parthasarathy Ranganathan, Christ...
BMCBI
2006
96views more  BMCBI 2006»
13 years 8 months ago
Structure alignment based on coding of local geometric measures
Background: A structure alignment method based on a local geometric property is presented and its performance is tested in pairwise and multiple structure alignments. In this appr...
Peter L. Chang, Andrew W. Rinne, T. Gregory Dewey
RECOMB
2006
Springer
14 years 9 months ago
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation
Abstract. This paper presents a new method for studying protein folding kinetics. It uses the recently introduced Stochastic Roadmap Simulation (SRS) method to estimate the transit...
Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L...
TCBB
2011
13 years 3 months ago
Information-Theoretic Model of Evolution over Protein Communication Channel
—In this paper, we propose a communication model of evolution and investigate its information-theoretic bounds. The process of evolution is modeled as the retransmission of infor...
Liuling Gong, Nidhal Bouaynaya, Dan Schonfeld