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» Comparisons of sequence labeling algorithms and extensions
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ISPDC
2007
IEEE
14 years 2 months ago
Whole Genome Comparison on a Network of Workstations
Whole genome comparison consists of comparing or aligning genome sequences with a goal of finding similarities between them. Previously we have shown how SIMD Extensions used in ...
Arpith C. Jacob, Sugata Sanyal, Marcin Paprzycki, ...
BMCBI
2007
136views more  BMCBI 2007»
13 years 8 months ago
Comparison of protein structures by growing neighborhood alignments
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
VLDB
1999
ACM
188views Database» more  VLDB 1999»
14 years 24 days ago
Comparing Hierarchical Data in External Memory
We present an external-memory algorithm for computing a minimum-cost edit script between two rooted, ordered, labeled trees. The I/O, RAM, and CPU costs of our algorithm are, resp...
Sudarshan S. Chawathe
KDD
2005
ACM
177views Data Mining» more  KDD 2005»
14 years 2 months ago
Combining partitions by probabilistic label aggregation
Data clustering represents an important tool in exploratory data analysis. The lack of objective criteria render model selection as well as the identification of robust solutions...
Tilman Lange, Joachim M. Buhmann
JCB
2000
91views more  JCB 2000»
13 years 8 months ago
Scaling Laws and Similarity Detection in Sequence Alignment with Gaps
We study the problem of similarity detection by sequence alignment with gaps, using a recently established theoretical framework based on the morphology of alignment paths. Alignm...
Dirk Drasdo, Terence Hwa, Michael Lässig