Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
In this paper, we present new results in performance analysis of super-resolution (SR) image reconstruction. We investigate bounds on the improvement in resolution that can be ach...
Contextual information is important for sequence modeling. Hidden Markov Models (HMMs) and extensions, which have been widely used for sequence modeling, make simplifying, often u...