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BMCBI
2007
124views more  BMCBI 2007»
13 years 9 months ago
BranchClust: a phylogenetic algorithm for selecting gene families
Background: Automated methods for assembling families of orthologous genes include those based on sequence similarity scores and those based on phylogenetic approaches. The first ...
Maria S. Poptsova, J. Peter Gogarten
BMCBI
2007
133views more  BMCBI 2007»
13 years 9 months ago
Semi-supervised learning for the identification of syn-expressed genes from fused microarray and in situ image data
Background: Gene expression measurements during the development of the fly Drosophila melanogaster are routinely used to find functional modules of temporally co-expressed genes. ...
Ivan G. Costa, Roland Krause, Lennart Opitz, Alexa...
BMCBI
2007
135views more  BMCBI 2007»
13 years 9 months ago
Automatic extraction of reliable regions from multiple sequence alignments
Background: High quality multiple alignments are crucial in the transfer of annotation from one genome to another. Multiple alignment methods strive to achieve ever increasing lev...
Timo Lassmann, Erik L. L. Sonnhammer
COMBINATORICA
2007
126views more  COMBINATORICA 2007»
13 years 9 months ago
Privileged users in zero-error transmission over a noisy channel
The k-th power of a graph G is the graph whose vertex set is V (G)k , where two distinct ktuples are adjacent iff they are equal or adjacent in G in each coordinate. The Shannon ...
Noga Alon, Eyal Lubetzky
JAIR
2008
103views more  JAIR 2008»
13 years 9 months ago
SATzilla: Portfolio-based Algorithm Selection for SAT
It has been widely observed that there is no single "dominant" SAT solver; instead, different solvers perform best on different instances. Rather than following the trad...
Lin Xu, Frank Hutter, Holger H. Hoos, Kevin Leyton...