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» Computability of Models for Sequence Assembly
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BMCBI
2011
13 years 3 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
DNA
2005
Springer
117views Bioinformatics» more  DNA 2005»
14 years 2 months ago
Simple Operations for Gene Assembly
Abstract. The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: ...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...
BMCBI
2010
154views more  BMCBI 2010»
13 years 8 months ago
An algorithm for automated closure during assembly
Background: Finishing is the process of improving the quality and utility of draft genome sequences generated by shotgun sequencing and computational assembly. Finishing can invol...
Sergey Koren, Jason R. Miller, Brian Walenz, Grang...
ICRA
1998
IEEE
92views Robotics» more  ICRA 1998»
14 years 25 days ago
Micro Planning for Mechanical Assembly Operations
Signi cant advances have been made in the area of macro planning for assembly operations i.e., dividing a product into sub-assemblies, determining the sequence of assembly operati...
S. K. Gupta, Christiaan J. J. Paredis, P. F. Brown
ICPR
2006
IEEE
14 years 9 months ago
A Hybrid, Recursive Algorithm for Clustering Expressed Sequence Tags in Chlamydomonas reinhardtii
We present an efficient, fully automated algorithm to assemble ESTs into full-length cDNA sequences that represent the complete coding regions of a gene. Our EST clustering algori...
Arthur Grossman, Charles Hauser, Hilary J. Holz, J...