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» Computation in Gene Networks
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CMSB
2006
Springer
14 years 1 months ago
Regulatory Network Reconstruction Using Stochastic Logical Networks
Abstract. This paper presents a method for regulatory network reconstruction from experimental data. We propose a mathematical model for regulatory interactions, based on the work ...
Bartek Wilczynski, Jerzy Tiuryn
GD
2009
Springer
14 years 2 months ago
Semi-bipartite Graph Visualization for Gene Ontology Networks
Abstract. In this paper we propose three layout algorithms for semibipartite graphs—bipartite graphs with edges in one partition—that emerge from microarray experiment analysis...
Kai Xu 0003, Rohan Williams, Seok-Hee Hong, Qing L...
RECOMB
2005
Springer
14 years 10 months ago
Reconstruction of Reticulate Networks from Gene Trees
Abstract. One of the simplest evolutionary models has molecular sequences evolving from a common ancestor down a bifurcating phylogenetic tree, experiencing point-mutations along t...
Daniel H. Huson, Tobias H. Klöpper, Pete J. L...
CISIS
2008
IEEE
14 years 4 months ago
Inferring the Function of Genes from Synthetic Lethal Mutations
—Techniques for detecting synthetic lethal mutations in double gene deletion experiments are emerging as powerful tool for analysing genes in parallel or overlapping pathways wit...
Oliver Ray, Christopher H. Bryant
NAR
2002
80views more  NAR 2002»
13 years 9 months ago
GeneNet: a database on structure and functional organisation of gene networks
The GeneNet database is designed for accumulation of information on gene networks. Original technology applied in GeneNet enables description of not only a gene network structure ...
Elena A. Ananko, Nikolay L. Podkolodny, Irina L. S...