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GECCO
2008
Springer
158views Optimization» more  GECCO 2008»
15 years 5 months ago
Structure and parameter estimation for cell systems biology models
In this work we present a new methodology for structure and parameter estimation in cell systems biology modelling. Our modelling framework is based on P systems, an unconl comput...
Francisco José Romero-Campero, Hongqing Cao...
BMCBI
2007
154views more  BMCBI 2007»
15 years 4 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
SAC
2005
ACM
15 years 9 months ago
A complex biological database querying method
Many biological information systems rely on relational database management systems (RDBMS) to manage high-throughput biological data. While keeping these data well archived, organ...
Jake Yue Chen, John V. Carlis, Ning Gao
SAC
2004
ACM
15 years 9 months ago
Combining analysis and synthesis in a model of a biological cell
for ideas, and then abstract away from these ideas to produce algorithmic processes that can create problem solutions in a bottom-up manner. We have previously described a top-dow...
Ken Webb, Tony White
WALCOM
2010
IEEE
230views Algorithms» more  WALCOM 2010»
15 years 11 months ago
Comparing RNA Structures with Biologically Relevant Operations Cannot Be Done without Strong Combinatorial Restrictions
Abstract. Arc-annotated sequences are useful for representing structural information of RNAs and have been extensively used for comparing RNA structures in both terms of sequence a...
Guillaume Blin, Sylvie Hamel, Stéphane Vial...