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ISMB
1997
15 years 5 months ago
Automated Alignment of RNA Sequences to Pseudoknotted Structures
Seq7 is a newprogramfor generating multiple structure-based alignments of RNAsequences. Byusing a variant of Dijkstra’s algorithm to find the shortest path through a specially c...
Jack E. Tabaska, Gary D. Stormo
ISMB
1996
15 years 5 months ago
Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation
Multiple sequence alignment of distantly related viral proteins remains a challenge to all currently available alignment methods. The hidden Markovmodel approach offers a new,flex...
Marcella A. McClure, Chris Smith, Pete Elton
ISMB
1994
15 years 5 months ago
Knowledge Discovery of Multilevel Protein Motifs
A new category of protein motif is introduced. This type of motif captures, in addition to global structure, the nested structure of its componentparts. Adata.set of four proteins...
Darrell Conklin, Suzanne Fortier, Janice I. Glasgo...
ISMB
1994
15 years 5 months ago
An Intelligent System for Comparing Protein Structures
Anapproachto protein structure comparisonis presented whichuses techniquesof artificial intelligence (AI) generate a mappingbetweentwoprotein structures. The approachproceedsby fi...
Ethan Benatan
ISMB
1994
15 years 5 months ago
A Restriction Mapping Engine Using Constraint Logic Programming
Restrictionmappinggenerallyrequires the applicationof information from various digestions by restriction enzymesto find solution sets. Weuse boththe predicate calculusandconstrain...
Trevor I. Dix, Chut N. Yee