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COCOON
2005
Springer
15 years 10 months ago
On the Approximation of Computing Evolutionary Trees
Given a set of leaf-labelled trees with identical leaf sets, the well-known MAST problem consists of finding a subtree homeomorphically included in all input trees and with the la...
Vincent Berry, Sylvain Guillemot, François ...
CORR
2008
Springer
170views Education» more  CORR 2008»
15 years 4 months ago
Fast Wavelet-Based Visual Classification
We investigate a biologically motivated approach to fast visual classification, directly inspired by the recent work [13]. Specifically, trading-off biological accuracy for comput...
Guoshen Yu, Jean-Jacques E. Slotine
RECOMB
2005
Springer
16 years 4 months ago
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks
Abstract. The interpretation of large-scale protein network data depends on our ability to identify significant sub-structures in the data, a computationally intensive task. Here w...
Jacob Scott, Trey Ideker, Richard M. Karp, Roded S...
BMCBI
2007
161views more  BMCBI 2007»
15 years 4 months ago
Efficient classification of complete parameter regions based on semidefinite programming
Background: Current approaches to parameter estimation are often inappropriate or inconvenient for the modelling of complex biological systems. For systems described by nonlinear ...
Lars Kuepfer, Uwe Sauer, Pablo A. Parrilo
CIBCB
2007
IEEE
15 years 8 months ago
Hybrid Architecture for Accelerating DNA Codeword Library Searching
-- A large and reliable DNA codeword library is the key to the success of DNA based computing. Searching for the set of reliable DNA codewords is an NP-hard problem, which can take...
Qinru Qiu, Daniel J. Burns, Qing Wu, Prakash Mukre