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TCS
2008
15 years 4 months ago
On temporal logic constraint solving for analyzing numerical data time series
Temporal logics and model-checking have proved successful to respectively express biological properties of complex biochemical systems, and automatically verify their satisfaction...
François Fages, Aurélien Rizk
124
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DAGSTUHL
2008
15 years 6 months ago
Constraint Satisfaction Problems with Infinite Templates
Allowing templates with infinite domains greatly expands the range of problems that can be formulated as a non-uniform constraint satisfaction problem. It turns out that many CSPs ...
Manuel Bodirsky
CIBCB
2006
IEEE
15 years 10 months ago
A Model-Free Greedy Gene Selection for Microarray Sample Class Prediction
— Microarray data analysis is notoriously challenging as it involves a huge number of genes compared to only a limited number of samples. Gene selection, to detect the most signi...
Yi Shi, Zhipeng Cai, Lizhe Xu, Wei Ren, Randy Goeb...
RECOMB
2009
Springer
16 years 5 months ago
Evaluating Between-Pathway Models with Expression Data
Abstract. Between-Pathway Models (BPMs) are network motifs consisting of pairs of putative redundant pathways. In this paper, we show how adding another source of high-throughput d...
Benjamin J. Hescott, Mark D. M. Leiserson, Lenore ...
RECOMB
2008
Springer
16 years 4 months ago
Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads
Next Generation Sequencing (NGS) technologies are capable of reading millions of short DNA sequences both quickly and cheaply. While these technologies are already being used for r...
Paul Medvedev, Michael Brudno