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RECOMB
2009
Springer
15 years 11 months ago
Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep
Abstract Constantinos Daskalakis1 , Elchanan Mossel2, , and Sebastien Roch1 1 Microsoft Research 2 UC Berkeley and Weizman Institute We introduce a new phylogenetic reconstruction ...
Constantinos Daskalakis, Elchanan Mossel, Sé...
RECOMB
2009
Springer
15 years 11 months ago
Reconstructing Histories of Complex Gene Clusters on a Phylogeny
Abstract. Clusters of genes that have evolved by repeated segmental duplication present difficult challenges throughout genomic analysis, from sequence assembly to functional analy...
Tomás Vinar, Brona Brejová, Giltae S...
RECOMB
2009
Springer
15 years 11 months ago
Rearrangement Models and Single-Cut Operations
Abstract. There have been many widely used genome rearrangement models, such as reversals, HannenhalliPevzner, and double-cut and join. Though each one can be precisely defined, t...
Paul Medvedev, Jens Stoye
BICOB
2009
Springer
15 years 11 months ago
Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors
Atomistic molecular dynamics (MD) simulations are a vital tool in chemical research, as they are able to provide a view of chemical systems and processes that is not obtainable thr...
Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Miche...
AB
2008
Springer
15 years 11 months ago
The Smallest Multistationary Mass-Preserving Chemical Reaction Network
Biochemical models that exhibit bistability are of interest to biologists and mathematicians alike. Chemical reaction network theory can provide sufficient conditions for the exist...
Anne Shiu