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CANDC
2000
ACM
15 years 3 months ago
Sequence Complexity for Biological Sequence Analysis
A new statistical model for DNA considers a sequence to be a mixture of regions with little structure and regions that are approximate repeats of other subsequences, i.e. instance...
Lloyd Allison, Linda Stern, Timothy Edgoose, Trevo...
CORR
2008
Springer
113views Education» more  CORR 2008»
15 years 3 months ago
Self-Stabilizing Pulse Synchronization Inspired by Biological Pacemaker Networks
We define the "Pulse Synchronization" problem that requires nodes to achieve tight synchronization of regular pulse events, in the settings of distributed computing syste...
Ariel Daliot, Danny Dolev, Hanna Parnas
CODES
2005
IEEE
15 years 9 months ago
Developing design tools for biological and biomedical applications of micro- and nano-technology
This short paper, an update of [75], is intended to provide a brief summary and extensive references on biological applications for micro- and nano-machining, as well as the compu...
Jacob White
115
Voted
CMSB
2007
Springer
15 years 7 months ago
Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus
This paper presents a simulation algorithm for the stochastic -calculus, designed for the efficient simulation of biological systems with large numbers of molecules. The cost of a ...
Andrew Phillips, Luca Cardelli
BMCBI
2006
194views more  BMCBI 2006»
15 years 3 months ago
Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems
Background: We consider the problem of parameter estimation (model calibration) in nonlinear dynamic models of biological systems. Due to the frequent ill-conditioning and multi-m...
Maria Rodriguez-Fernandez, Jose A. Egea, Julio R. ...