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IPPS
2009
IEEE
14 years 3 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
TAMC
2009
Springer
14 years 3 months ago
The Extended Turing Model as Contextual Tool
Computability concerns information with a causal – typically algorithmic – structure. As such, it provides a schematic analysis of many naturally occurring situations. We look ...
S. Barry Cooper
RECOMB
1997
Springer
14 years 19 days ago
On the complexity and approximation of syntenic distance
The paper studies the computational complexity and approximation algorithms for a new evolutionary distance between multi-chromosomal genomes introduced recently by Ferretti, Nade...
Bhaskar DasGupta, Tao Jiang, Sampath Kannan, Ming ...
BMCBI
2007
233views more  BMCBI 2007»
13 years 8 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
IWCMC
2006
ACM
14 years 2 months ago
A heuristics based approach for cellular mobile network planning
Designing and planning of the switching, signaling and support network is a fairly complex process in cellular mobile network. In this paper, the problem of assigning cells to swi...
Marwan H. Abu-Amara, Sadiq M. Sait, Abdul Subhan