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» Computing Exact p-Value for Structured Motif
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CPM
2007
Springer
222views Combinatorics» more  CPM 2007»
14 years 5 months ago
Computing Exact p-Value for Structured Motif
Extracting motifs from a set of DNA sequences is important in computational biology. Occurrence probability is a common used statistics to evaluate the statistical significance of...
Jing Zhang, Xi Chen, Ming Li
BMCBI
2010
124views more  BMCBI 2010»
13 years 11 months ago
Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated
Background: Large datasets of protein interactions provide a rich resource for the discovery of Short Linear Motifs (SLiMs) that recur in unrelated proteins. However, existing met...
Norman E. Davey, Richard J. Edwards, Denis C. Shie...
SDM
2009
SIAM
164views Data Mining» more  SDM 2009»
14 years 8 months ago
Exact Discovery of Time Series Motifs.
Time series motifs are pairs of individual time series, or subsequences of a longer time series, which are very similar to each other. As with their discrete analogues in computat...
Abdullah Mueen, Eamonn J. Keogh, M. Brandon Westov...
GCB
2008
Springer
174views Biometrics» more  GCB 2008»
13 years 12 months ago
Lightweight Comparison of RNAs based on Exact Sequence-structure Matches
: Specific functions of RNA molecules are often associated with different motifs in the RNA structure. The key feature that forms such an RNA motif is the combination of sequence ...
Steffen Heyne, Sebastian Will, Michael Beckstette,...
BIRD
2008
Springer
162views Bioinformatics» more  BIRD 2008»
14 years 27 days ago
Suffix Tree Characterization of Maximal Motifs in Biological Sequences
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
Maria Federico, Nadia Pisanti