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» Computing Expectation Values for Molecular Quantum Dynamics
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DNA
2004
Springer
13 years 12 months ago
DNA-Based Computation Times
Abstract. Speed of computation and power consumption are the two main parameters of conventional computing devices implemented in microelectronic circuits. As performance of such d...
Yuliy M. Baryshnikov, Edward G. Coffman Jr., Petar...
IWINAC
2007
Springer
14 years 22 days ago
Gaining Insights into Laser Pulse Shaping by Evolution Strategies
Abstract. We consider the numerical evolutionary optimization of dynamic molecular alignment by shaped femtosecond laser pulses. We study a simplified model of this quantum contro...
Ofer M. Shir, Joost N. Kok, Thomas Bäck, Marc...
JCC
2011
87views more  JCC 2011»
13 years 1 months ago
Determining equilibrium constants for dimerization reactions from molecular dynamics simulations
Abstract: With today’s available computer power, free energy calculations from equilibrium molecular dynamics simulations “via counting” become feasible for an increasing num...
Djurre H. De Jong, Lars V. Schäfer, Alex H. D...
JCC
2002
73views more  JCC 2002»
13 years 6 months ago
Linear scaling approaches to quantum macromolecular similarity: Evaluating the similarity function
: The evaluation of the electron density based similarity function scales quadratically with respect to the size of the molecules for simplified, atomic shell densities. Due to the...
Pere Constans
BMCBI
2010
141views more  BMCBI 2010»
13 years 6 months ago
Computing and visually analyzing mutual information in molecular co-evolution
Background: Selective pressure in molecular evolution leads to uneven distributions of amino acids and nucleotides. In fact one observes correlations among such constituents due t...
Sebastian Bremm, Tobias Schreck, Patrick Boba, Ste...