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» Computing Expectation Values for Molecular Quantum Dynamics
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IJHPCA
2008
131views more  IJHPCA 2008»
13 years 7 months ago
De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
We present a de novo hierarchical simulation framework for first-principles based predictive simulations of materials and their validation on high-end parallel supercomputers and ...
Aiichiro Nakano, Rajiv K. Kalia, Ken-ichi Nomura, ...
ISVD
2010
IEEE
13 years 5 months ago
Hydration Shells in Voronoi Tessellations
An interesting property of the Voronoi tessellation is studied in the context of its application to the analysis of hydration shells in computer simulation of solutions. Namely the...
V. P. Voloshin, Alexey V. Anikeenko, Nikolai N. Me...
ISMB
1996
13 years 8 months ago
Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming
For transmembrane proteins experimental determina-tion of three-dimensional structure is problematic. However, membrane proteins have important impact for molecular biology in gen...
Burkhard Rost, Rita Casadio, Piero Fariselli
MOBIHOC
2009
ACM
14 years 2 months ago
Revenue generation for truthful spectrum auction in dynamic spectrum access
Spectrum is a critical yet scarce resource and it has been shown that dynamic spectrum access can significantly improve spectrum utilization. To achieve this, it is important to ...
Juncheng Jia, Qian Zhang, Qin Zhang, Mingyan Liu
RECOMB
2007
Springer
14 years 7 months ago
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation
We present a technique for approximating the free energy of protein structures using Generalized Belief Propagation (GBP). The accuracy and utility of these estimates are then demo...
Hetunandan Kamisetty, Eric P. Xing, Christopher Ja...