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ICCABS
2011
13 years 4 days ago
Towards accelerating molecular modeling via multi-scale approximation on a GPU
—Research efforts to analyze biomolecular properties contribute towards our understanding of biomolecular function. Calculating non-bonded forces (or in our case, electrostatic s...
Mayank Daga, Wu-chun Feng, Thomas Scogland
SMA
2009
ACM
185views Solid Modeling» more  SMA 2009»
14 years 2 months ago
A dynamic data structure for flexible molecular maintenance and informatics
We present the “Dynamic Packing Grid” (DPG) data structure along with details of our implementation and performance results, for maintaining and manipulating flexible molecul...
Chandrajit L. Bajaj, Rezaul Alam Chowdhury, Muhibu...
IROS
2008
IEEE
131views Robotics» more  IROS 2008»
14 years 2 months ago
Deformations of general parametric shells: Computation and robot experiment
— A shell is a body enclosed between two closely spaced and curved surfaces. Classical theory of shells [38], [33], [16] assumes a parametrization along the lines of principal cu...
Yan-Bin Jia, Jiang Tian
BMCBI
2008
146views more  BMCBI 2008»
13 years 8 months ago
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Background: Recent approaches for predicting the three-dimensional (3D) structure of proteins such as de novo or fold recognition methods mostly rely on simplified energy potentia...
Jean-François Taly, Antoine Marin, Jean-Fra...
ALGORITHMICA
1999
84views more  ALGORITHMICA 1999»
13 years 8 months ago
Computational Approaches to Drug Design
Abstract. The rational approach to pharmaceutical drug design begins with an investigation of the relationship between chemical structure and biological activity. Information gaine...
Paul W. Finn, Lydia E. Kavraki