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HPCA
2000
IEEE
14 years 1 months ago
eXtended Block Cache
This paper describes a new instruction-supply mechanism, called the eXtended Block Cache (XBC). The goal of the XBC is to improve on the Trace Cache (TC) hit rate, while providing...
Stéphan Jourdan, Lihu Rappoport, Yoav Almog...
HPDC
2008
IEEE
13 years 8 months ago
Eliminating the middleman: peer-to-peer dataflow
Efficiently executing large-scale, data-intensive workflows such as Montage must take into account the volume and pattern of communication. When orchestrating data-centric workflo...
Adam Barker, Jon B. Weissman, Jano I. van Hemert
JMLR
2012
11 years 11 months ago
Fast interior-point inference in high-dimensional sparse, penalized state-space models
We present an algorithm for fast posterior inference in penalized high-dimensional state-space models, suitable in the case where a few measurements are taken in each time step. W...
Eftychios A. Pnevmatikakis, Liam Paninski
BMCBI
2007
142views more  BMCBI 2007»
13 years 8 months ago
SABERTOOTH: protein structural alignment based on a vectorial structure representation
Background: The task of computing highly accurate structural alignments of proteins in very short computation time is still challenging. This is partly due to the complexity of pr...
Florian Teichert, Ugo Bastolla, Markus Porto
BMCBI
2008
96views more  BMCBI 2008»
13 years 8 months ago
The value of position-specific scoring matrices for assessment of protein allegenicity
Background: Bioinformatics tools are commonly used for assessing potential protein allergenicity. While these methods have achieved good accuracies for highly conserved sequences,...
Shen Jean Lim, Joo Chuan Tong, Fook Tim Chew, Mart...