Pattern discovery in sequences is an important problem in many applications, especially in computational biology and text mining. However, due to the noisy nature of data, the tra...
Abstract. This paper argues that flatness appears as a central notion in the verification of counter automata. A counter automaton is called flat when its control graph can be ...
While model checking suffers from the state space explosion problem, theorem proving is quite tedious and impractical for verifying complex designs. In this work, we present a veri...
From the phosphorylation state of a molecule to the volume of a cell, parameters are ubiquitous in systems biology. At the same time, most models involve static or dynamic compart...
A Bayesian method for estimating the amino acid distributions in the states of a hidden Markov model (HMM) for a protein familyor the columns of a multiple alignment of that famil...
Michael Brown, Richard Hughey, Anders Krogh, I. Sa...