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» Computing Reachable States for Nonlinear Biological Models
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CIBCB
2005
IEEE
15 years 9 months ago
Feedback Memetic Algorithms for Modeling Gene Regulatory Networks
— In this paper we address the problem of finding gene regulatory networks from experimental DNA microarray data. We focus on the evaluation of the performance of memetic algori...
Christian Spieth, Felix Streichert, Jochen Supper,...
AB
2008
Springer
15 years 6 months ago
The Geometry of the Neighbor-Joining Algorithm for Small Trees
In 2007, Eickmeyer et al. showed that the tree topologies outputted by the Neighbor-Joining (NJ) algorithm and the balanced minimum evolution (BME) method for phylogenetic reconstr...
Kord Eickmeyer, Ruriko Yoshida
BMCBI
2008
112views more  BMCBI 2008»
15 years 4 months ago
A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regul
Background: Innumerable biological investigations require comparing collections of molecules, cells or organisms to one another with respect to one or more of their properties. Al...
Arnab Bhattacharya, Sasha Levy, Adria LeBoeuf, Mic...
SPIN
2010
Springer
15 years 2 months ago
Analysing Mu-Calculus Properties of Pushdown Systems
Pushdown systems provide a natural model of software with recursive procedure calls. We provide a tool implementing an algorithm for computing the winning regions of a pushdown par...
Matthew Hague, C.-H. Luke Ong
SACMAT
2009
ACM
15 years 10 months ago
Towards formal security analysis of GTRBAC using timed automata
An access control system is often viewed as a state transition system. Given a set of access control policies, a general safety requirement in such a system is to determine whethe...
Samrat Mondal, Shamik Sural, Vijayalakshmi Atluri