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WWW
2007
ACM
14 years 8 months ago
Dynamic personalized pagerank in entity-relation graphs
Extractors and taggers turn unstructured text into entityrelation (ER) graphs where nodes are entities (email, paper, person, conference, company) and edges are relations (wrote, ...
Soumen Chakrabarti
BIOINFORMATICS
2005
151views more  BIOINFORMATICS 2005»
13 years 7 months ago
Differential and trajectory methods for time course gene expression data
Motivation: The issue of high dimensionality in microarray data has been, and remains, a hot topic in statistical and computational analysis. Efficient gene filtering and differen...
Yulan Liang, Bamidele Tayo, Xueya Cai, Arpad Kelem...
FOCS
2009
IEEE
14 years 2 months ago
Planarity Allowing Few Error Vertices in Linear Time
— We show that for every fixed k, there is a linear time algorithm that decides whether or not a given graph has a vertex set X of order at most k such that G − X is planar (w...
Ken-ichi Kawarabayashi
BMCBI
2007
111views more  BMCBI 2007»
13 years 7 months ago
MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
Background: A combination of multiple types of transcription factors and cis-regulatory elements is often required for gene expression in eukaryotes, and the combinatorial regulat...
Mamoru Kato, Tatsuhiko Tsunoda
ESA
2005
Springer
131views Algorithms» more  ESA 2005»
14 years 1 months ago
Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs
We introduce a new way to compute common intervals of K permutations based on a very simple and general notion of generators of common intervals. This formalism leads to simple an...
Anne Bergeron, Cedric Chauve, Fabien de Montgolfie...