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» Computing Sparse Multiples of Polynomials
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DAC
2004
ACM
14 years 8 months ago
Sparse transformations and preconditioners for hierarchical 3-D capacitance extraction with multiple dielectrics
Capacitance extraction is an important problem that has been extensively studied. This paper presents a significant improvement for the fast multipole accelerated boundary element...
Shu Yan, Vivek Sarin, Weiping Shi
IPPS
2007
IEEE
14 years 2 months ago
Memory Optimizations For Fast Power-Aware Sparse Computations
— We consider memory subsystem optimizations for improving the performance of sparse scientific computation while reducing the power consumed by the CPU and memory. We first co...
Konrad Malkowski, Padma Raghavan, Mary Jane Irwin
ICCS
2009
Springer
14 years 2 months ago
Fast Conjugate Gradients with Multiple GPUs
The limiting factor for efficiency of sparse linear solvers is the memory bandwidth. In this work, we utilize GPU’s high memory bandwidth for implementation of a sparse iterative...
Ali Cevahir, Akira Nukada, Satoshi Matsuoka
CPM
2004
Springer
156views Combinatorics» more  CPM 2004»
14 years 1 months ago
A Computational Model for RNA Multiple Structural Alignment.
Abstract. This paper addresses the problem of aligning multiple sequences of non-coding RNA genes. We approach this problem with the biologically motivated paradigm that scoring of...
Eugene Davydov, Serafim Batzoglou
HPCS
2009
IEEE
13 years 11 months ago
FFT-Based Dense Polynomial Arithmetic on Multi-cores
We report efficient implementation techniques for FFT-based dense multivariate polynomial arithmetic over finite fields, targeting multi-cores. We have extended a preliminary study...
Marc Moreno Maza, Yuzhen Xie