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ICASSP
2010
IEEE
13 years 7 months ago
Swift: Scalable weighted iterative sampling for flow cytometry clustering
Flow cytometry (FC) is a powerful technology for rapid multivariate analysis and functional discrimination of cells. Current FC platforms generate large, high-dimensional datasets...
Iftekhar Naim, Suprakash Datta, Gaurav Sharma, Jam...
BMCBI
2010
153views more  BMCBI 2010»
13 years 7 months ago
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone ...
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
BMCBI
2004
117views more  BMCBI 2004»
13 years 7 months ago
Cancer characterization and feature set extraction by discriminative margin clustering
Background: A central challenge in the molecular diagnosis and treatment of cancer is to define a set of molecular features that, taken together, distinguish a given cancer, or ty...
Kamesh Munagala, Robert Tibshirani, Patrick O. Bro...
BMCBI
2007
116views more  BMCBI 2007»
13 years 7 months ago
Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement
Background: Biological information is commonly used to cluster or classify entities of interest such as genes, conditions, species or samples. However, different sources of data c...
Francisco R. Pinto, João A. Carriço,...
CSB
2003
IEEE
123views Bioinformatics» more  CSB 2003»
14 years 23 days ago
Fourier Harmonic Approach for Visualizing Temporal Patterns of Gene Expression Data
DNA microarray technology provides a broad snapshot of the state of the cell by measuring the expression levels of thousands of genes simultaneously. Visualization techniques can ...
Li Zhang, Aidong Zhang, Murali Ramanathan