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157
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HPDC
2010
IEEE
15 years 5 months ago
Data parallelism in bioinformatics workflows using Hydra
Large scale bioinformatics experiments are usually composed by a set of data flows generated by a chain of activities (programs or services) that may be modeled as scientific work...
Fábio Coutinho, Eduardo S. Ogasawara, Danie...
IPPS
2006
IEEE
15 years 10 months ago
Reducing reconfiguration time of reconfigurable computing systems in integrated temporal partitioning and physical design framew
In reconfigurable systems, reconfiguration latency is a very important factor impact the system performance. In this paper, a framework is proposed that integrates the temporal pa...
Farhad Mehdipour, Morteza Saheb Zamani, H. R. Ahma...
DAC
2006
ACM
16 years 4 months ago
Novel full-chip gridless routing considering double-via insertion
As the technology node advances into the nanometer era, via-open defects are one of the dominant failures. To improve via yield and reliability, redundant-via insertion is a highl...
Huang-Yu Chen, Mei-Fang Chiang, Yao-Wen Chang, Lum...
145
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JPDC
2007
167views more  JPDC 2007»
15 years 3 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
ICPP
2009
IEEE
15 years 10 months ago
Accelerating Checkpoint Operation by Node-Level Write Aggregation on Multicore Systems
—Clusters and applications continue to grow in size while their mean time between failure (MTBF) is getting smaller. Checkpoint/Restart is becoming increasingly important for lar...
Xiangyong Ouyang, Karthik Gopalakrishnan, Dhabales...