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» Constraint Based Methods for Biological Sequence Analysis
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PROCEDIA
2011
14 years 7 months ago
Exact Closest String as a Constraint Satisfaction Problem
We report the first evaluation of Constraint Satisfaction as a computational framework for solving closest string problems. We show that careful consideration of symbol occurrenc...
Tom Kelsey, Lars Kotthoff
MOC
1998
175views more  MOC 1998»
15 years 3 months ago
Convergence of a non-stiff boundary integral method for interfacial flows with surface tension
Boundary integral methods to simulate interfacial flows are very sensitive to numerical instabilities. In addition, surface tension introduces nonlinear terms with high order spat...
Héctor D. Ceniceros, Thomas Y. Hou
RECOMB
2001
Springer
16 years 4 months ago
Class discovery in gene expression data
Recent studies (Alizadeh et al, [1]; Bittner et al,[5]; Golub et al, [11]) demonstrate the discovery of putative disease subtypes from gene expression data. The underlying computa...
Amir Ben-Dor, Nir Friedman, Zohar Yakhini
JOBIM
2000
15 years 7 months ago
InterDB, a Prediction-Oriented Protein Interaction Database for C. elegans
Protein-protein interactions are critical to many biological processes, extending from the formation of cellular macromolecular structures and enzymatic complexes to the regulation...
Nicolas Thierry-Mieg, Laurent Trilling
BMCBI
2007
97views more  BMCBI 2007»
15 years 4 months ago
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
Background: Microarray co-expression signatures are an important tool for studying gene function and relations between genes. In addition to genuine biological co-expression, corr...
Tineke Casneuf, Yves Van de Peer, Wolfgang Huber