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» Constraint Based Methods for Biological Sequence Analysis
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BMCBI
2011
14 years 11 months ago
Appearance frequency modulated gene set enrichment testing
Background: Gene set enrichment testing has helped bridge the gap from an individual gene to a systems biology interpretation of microarray data. Although gene sets are defined a ...
Jun Ma, Maureen A. Sartor, H. V. Jagadish
HICSS
2002
IEEE
127views Biometrics» more  HICSS 2002»
15 years 9 months ago
Interactive Visualization and Analysis for Gene Expression Data
Currently, the cDNA and genomic sequence projects are processing at such a rapid rate that more and more gene data become available. New methods are needed to efficiently and eff...
Chun Tang, Li Zhang, Aidong Zhang
BMCBI
2007
131views more  BMCBI 2007»
15 years 4 months ago
FUNC: a package for detecting significant associations between gene sets and ontological annotations
Background: Genome-wide expression, sequence and association studies typically yield large sets of gene candidates, which must then be further analysed and interpreted. Informatio...
Kay Prüfer, Bjoern Muetzel, Hong Hai Do, Gunt...
BMCBI
2007
142views more  BMCBI 2007»
15 years 4 months ago
SABERTOOTH: protein structural alignment based on a vectorial structure representation
Background: The task of computing highly accurate structural alignments of proteins in very short computation time is still challenging. This is partly due to the complexity of pr...
Florian Teichert, Ugo Bastolla, Markus Porto
ECAL
2001
Springer
15 years 9 months ago
Taxonomy in Alife. Measures of Similarity for Complex Artificial Organisms
In this paper a formal approach to construction of a similarity measure for complex creatures is presented. The simulation model is described, and a Framsticks agent is expressed i...
Maciej Komosinski, Marek Kubiak