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» Constraint Based Methods for Biological Sequence Analysis
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BIODATAMINING
2008
135views more  BIODATAMINING 2008»
15 years 3 months ago
Fast Gene Ontology based clustering for microarray experiments
Background: Analysis of a microarray experiment often results in a list of hundreds of diseaseassociated genes. In order to suggest common biological processes and functions for t...
Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi
273
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COCOA
2011
Springer
14 years 3 months ago
Algorithmic Aspects of Heterogeneous Biological Networks Comparison
Biological networks are commonly used to model molecular activity within the cell. Recent experimental studies have shown that the detection of conserved subnetworks across several...
Guillaume Blin, Guillaume Fertin, Hafedh Mohamed-B...
BMCBI
2007
122views more  BMCBI 2007»
15 years 3 months ago
Dissecting complex transcriptional responses using pathway-level scores based on prior information
Background: The genomewide pattern of changes in mRNA expression measured using DNA microarrays is typically a complex superposition of the response of multiple regulatory pathway...
Harmen J. Bussemaker, Lucas D. Ward, André ...
140
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BMCBI
2008
138views more  BMCBI 2008»
15 years 3 months ago
M-BISON: Microarray-based integration of data sources using networks
Background: The accurate detection of differentially expressed (DE) genes has become a central task in microarray analysis. Unfortunately, the noise level and experimental variabi...
Bernie J. Daigle Jr., Russ B. Altman
INFORMATICALT
2011
89views more  INFORMATICALT 2011»
14 years 10 months ago
Large-Scale Data Analysis Using Heuristic Methods
Estimation and modelling problems as they arise in many data analysis areas often turn out to be unstable and/or intractable by standard numerical methods. Such problems frequently...
Gintautas Dzemyda, Leonidas Sakalauskas