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» Constraint Based Methods for Biological Sequence Analysis
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BIBE
2005
IEEE
14 years 1 months ago
Using Data Mining Techniques to Learn Layouts of Flat-File Biological Datasets
One of the major problems in biological data integration is that many data sources are stored as flat-files, with a variety of different layouts. Integrating data from such sour...
Kaushik Sinha, Xuan Zhang, Ruoming Jin, Gagan Agra...
WABI
2010
Springer
167views Bioinformatics» more  WABI 2010»
13 years 5 months ago
Quantifying the Strength of Natural Selection of a Motif Sequence
Quantification of selective pressures on regulatory sequences is a central question in studying the evolution of gene regulatory networks. Previous methods focus primarily on sing...
Chen-Hsiang Yeang
INFOVIS
2003
IEEE
14 years 22 days ago
BARD: A visualization tool for biological sequence analysis
We present BARD (biological arc diagrams), a visualization tool for biological sequence analysis. The development of BARD began with the application of Wattenberg’s arc diagrams...
Rhazes Spell, Rachael Brady, Fred Dietrich
BIB
2008
77views more  BIB 2008»
13 years 7 months ago
Experience using web services for biological sequence analysis
Programmatic access to data and tools through the web using so-called web services has an important role to play in bioinformatics. In this article, we discuss the most popular ap...
Heinz Stockinger, Teresa K. Attwood, Shahid Nadeem...
BMCBI
2010
151views more  BMCBI 2010»
13 years 7 months ago
TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and e
Background: Identification of transcription factors (TFs) involved in a biological process is the first step towards a better understanding of the underlying regulatory mechanisms...
Xiaoqi Cui, Tong Wang, Huann-Sheng Chen, Victor Bu...