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» Constraint Based Methods for Biological Sequence Analysis
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140
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BMCBI
2010
108views more  BMCBI 2010»
15 years 3 months ago
An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs
Background: Transcription factors (TFs) control transcription by binding to specific regions of DNA called transcription factor binding sites (TFBSs). The identification of TFBSs ...
Fernando Garcia-Alcalde, Armando Blanco, Adrian J....
110
Voted
CIBCB
2006
IEEE
15 years 9 months ago
Prediction of the Number of Helices for the Twilight Zone Proteins
– Protein structure prediction is one of the core research areas in bioinformatics. This paper addresses the protein secondary structure prediction problem for the twilight zone ...
Kanaka Durga Kedarisetti, Ke Chen, Aashima Kapoor,...
137
Voted
BMCBI
2010
98views more  BMCBI 2010»
15 years 3 months ago
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure
Background: Prediction of protein structural classes (a, b, a + b and a/b) from amino acid sequences is of great importance, as it is beneficial to study protein function, regulat...
Jian-Yi Yang, Zhen-Ling Peng, Xin Chen
135
Voted
FORTE
2009
15 years 1 months ago
Approximated Context-Sensitive Analysis for Parameterized Verification
Abstract. We propose a verification method for parameterized systems with global conditions. The method is based on context-sensitive constraints, a symbolic representation of infi...
Parosh Aziz Abdulla, Giorgio Delzanno, Ahmed Rezin...
130
Voted
RECOMB
2006
Springer
16 years 4 months ago
RNA Secondary Structure Prediction Via Energy Density Minimization
Abstract. There is a resurgence of interest in RNA secondary structure prediction problem (a.k.a. the RNA folding problem) due to the discovery of many new families of non-coding R...
Can Alkan, Emre Karakoç, Süleyman Cenk...