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» Constraint Programming in Structural Bioinformatics
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131
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CSB
2005
IEEE
133views Bioinformatics» more  CSB 2005»
15 years 8 months ago
Creating a Protein Ontology Resource
Protein Data Integration approaches at the moment considers data sources as data repositories, but not as applications; which in turn may embody complex interactions with other da...
Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Cha...
BMCBI
2006
141views more  BMCBI 2006»
15 years 2 months ago
Maximum common subgraph: some upper bound and lower bound results
Background: Structure matching plays an important part in understanding the functional role of biological structures. Bioinformatics assists in this effort by reformulating this p...
Xiuzhen Huang, Jing Lai, Steven F. Jennings
127
Voted
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
15 years 8 months ago
Multiple Structural RNA Alignment with Lagrangian Relaxation
In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
Markus Bauer, Gunnar W. Klau, Knut Reinert
186
Voted
APBC
2004
173views Bioinformatics» more  APBC 2004»
15 years 3 months ago
RNA Secondary Structure Prediction with Simple Pseudoknots
Pseudoknots are widely occurring structural motifs in RNA. Pseudoknots have been shown to be functionally important in different RNAs which play regulatory, catalytic, or structur...
Jitender S. Deogun, Ruben Donts, Olga Komina, Fang...
BIB
2008
86views more  BIB 2008»
15 years 2 months ago
Recent developments in the MAFFT multiple sequence alignment program
The accuracy and scalability of multiple sequence alignment (MSA) of DNAs and proteins have long been and are still important issues in bioinformatics. To rapidly construct a reas...
Kazutaka Katoh, Hiroyuki Toh