In this work we describe a sequence compression method based on combining a Bayesian nonparametric sequence model with entropy encoding. The model, a hierarchy of Pitman-Yor proce...
Inferring orthologous and paralogous genes is an important problem in whole genomes comparisons, both for functional or evolutionary studies. In this paper, we introduce a new appr...
This work is designed to contribute to a deeper understanding of the recently proposed Merging SOM (MSOM). Its context model aims at the representation of sequences, an important s...
This work draws on the cultural historical activity-theory and the theory of social systems to model socio-technical systems. The concepts of practice, system, and context work as ...
In Sequential Viterbi Models, such as HMMs, MEMMs, and Linear Chain CRFs, the type of patterns over output sequences that can be learned by the model depend directly on the modelâ...