309 search results - page 33 / 62 » Contextual alignment of biological sequences |
NIPS
2004
13 years 9 months ago
2004
Amino acid profiles, which capture position-specific mutation probabilities, are a richer encoding of biological sequences than the individual sequences themselves. However, profi...
TCBB
2010
13 years 6 months ago
2010
— We describe a theoretical unifying framework to express comparison of RNA structures, which we call alignment hierarchy. This framework relies on the definition of common supe...
BMCBI
2006
13 years 7 months ago
2006
Background: Molecular evolutionary studies of noncoding sequences rely on multiple alignments. Yet how multiple alignment accuracy varies across sequence types, tree topologies, d...
RECOMB
2009
Springer
14 years 8 months ago
2009
Springer
Prediction and alignment of RNA pseudoknot structures are NP-hard. Nevertheless, several efficient prediction algorithms by dynamic programming have been proposed for restricted cl...
HPDC
2010
IEEE
13 years 8 months ago
2010
IEEE
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...