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» Contextual alignment of biological sequences
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RECOMB
2009
Springer
14 years 7 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...
ECCB
2008
IEEE
14 years 1 months ago
Segment-based multiple sequence alignment
Tobias Rausch, Anne-Katrin Emde, David Weese, Andr...
ISMB
2000
13 years 8 months ago
UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences
Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret...
IPPS
2007
IEEE
14 years 1 months ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
BIBE
2006
IEEE
132views Bioinformatics» more  BIBE 2006»
14 years 29 days ago
Simplicity in RNA Secondary Structure Alignment: Towards biologically plausible alignments
Ribonucleic acid (RNA) molecules contain the genetic information that regulates the functions of organisms. Given two different molecules, a preserved function corresponds to a pr...
Rimon Mikhaiel, Guohui Lin, Eleni Stroulia