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» Continuous optimization methods for structure alignments
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MP
2008
77views more  MP 2008»
13 years 9 months ago
Continuous optimization methods for structure alignments
Roberto Andreani, José Mario Martíne...
BMCBI
2007
160views more  BMCBI 2007»
13 years 9 months ago
Convergent algorithms for protein structural alignment
Background: Many algorithms exist for protein structural alignment, based on internal protein coordinates or on explicit superposition of the structures. These methods are usually...
Leandro Martínez, Roberto Andreani, Jos&eac...
BMCBI
2010
139views more  BMCBI 2010»
13 years 9 months ago
A global optimization algorithm for protein surface alignment
Background: A relevant problem in drug design is the comparison and recognition of protein binding sites. Binding sites recognition is generally based on geometry often combined w...
Paola Bertolazzi, Concettina Guerra, Giampaolo Liu...
BMCBI
2005
122views more  BMCBI 2005»
13 years 9 months ago
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequenc
Background: Currently available methods to predict splice sites are mainly based on the independent and progressive alignment of transcript data (mostly ESTs) to the genomic seque...
Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
CORR
2010
Springer
80views Education» more  CORR 2010»
13 years 9 months ago
Many-to-Many Graph Matching: a Continuous Relaxation Approach
Graphs provide an efficient tool for object representation in various computer vision applications. Once graph-based representations are constructed, an important question is how ...
Mikhail Zaslavskiy, Francis Bach, Jean-Philippe Ve...