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ICPP
2009
IEEE
14 years 2 months ago
LeWI: A Runtime Balancing Algorithm for Nested Parallelism
Abstract—We present LeWI: a novel load balancing algorithm, that can balance applications with very different patterns of imbalance. Our algorithm can balance fine grain imbalan...
Marta Garcia, Julita Corbalán, Jesús...
CCGRID
2009
IEEE
13 years 9 months ago
Efficient Grid Task-Bundle Allocation Using Bargaining Based Self-Adaptive Auction
To address coordination and complexity issues, we formulate a grid task allocation problem as a bargaining based self-adaptive auction and propose the BarSAA grid task-bundle alloc...
Han Zhao, Xiaolin Li
ISMB
1997
13 years 9 months ago
Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations
The structural comparison of proteins has become increasingly important as a means to identify protein motifs and fold families. In this paper we present a new algorithm for the c...
Amit Pal Singh, Douglas L. Brutlag
APBC
2004
173views Bioinformatics» more  APBC 2004»
13 years 9 months ago
RNA Secondary Structure Prediction with Simple Pseudoknots
Pseudoknots are widely occurring structural motifs in RNA. Pseudoknots have been shown to be functionally important in different RNAs which play regulatory, catalytic, or structur...
Jitender S. Deogun, Ruben Donts, Olga Komina, Fang...
ESA
2003
Springer
111views Algorithms» more  ESA 2003»
14 years 1 months ago
Fast Smallest-Enclosing-Ball Computation in High Dimensions
Abstract. We develop a simple combinatorial algorithm for computing the smallest enclosing ball of a set of points in high dimensional Euclidean space. The resulting code is in mos...
Kaspar Fischer, Bernd Gärtner, Martin Kutz