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» Counting Distance Permutations
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MFCS
2005
Springer
14 years 1 months ago
Approximating Reversal Distance for Strings with Bounded Number of Duplicates
For a string A = a1 . . . an, a reversal ρ(i, j), 1 ≤ i < j ≤ n, transforms the string A into a string A = a1 . . . ai−1ajaj−1 . . . aiaj+1 . . . an, that is, the reve...
Petr Kolman
ICML
2010
IEEE
13 years 8 months ago
The Translation-invariant Wishart-Dirichlet Process for Clustering Distance Data
We present a probabilistic model for clustering of objects represented via pairwise dissimilarities. We propose that even if an underlying vectorial representation exists, it is b...
Julia E. Vogt, Sandhya Prabhakaran, Thomas J. Fuch...
DAGSTUHL
2006
13 years 9 months ago
Vertex reconstruction in Cayley graphs
In this report paper we collect recent results on the vertex reconstruction in Cayley graphs Cay(G, S). The problem is stated as the problem of reconstructing a vertex from the mi...
Elena V. Konstantinova
JDA
2008
122views more  JDA 2008»
13 years 7 months ago
An approximation algorithm for sorting by reversals and transpositions
Abstract. Genome rearrangement algorithms are powerful tools to analyze gene orders in molecular evolution. Analysis of genomes evolving by reversals and transpositions leads to a ...
Atif Rahman, Swakkhar Shatabda, Masud Hasan

Publication
141views
12 years 6 months ago
Measures of Diversity for Populations and Distances Between Individuals with Highly Reorganizable Genomes
In this paper we address the problem of defining a measure of diversity for a population of individuals whose genome can be subjected to major reorganizations during the evolution...
Claudio Mattiussi, Markus Waibel, Dario Floreano