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PPOPP
2009
ACM
14 years 8 months ago
Application-aware management of parallel simulation collections
This paper presents a system deployed on parallel clusters to manage a collection of parallel simulations that make up a computational study. It explores how such a system can ext...
Siu Yau, Vijay Karamcheti, Denis Zorin, Kostadin D...
BMCBI
2008
118views more  BMCBI 2008»
13 years 7 months ago
DOVIS: an implementation for high-throughput virtual screening using AutoDock
Background: Molecular-docking-based virtual screening is an important tool in drug discovery that is used to significantly reduce the number of possible chemical compounds to be i...
Shuxing Zhang, Kamal Kumar, Xiaohui Jiang, Anders ...
IPPS
2010
IEEE
13 years 5 months ago
A low cost split-issue technique to improve performance of SMT clustered VLIW processors
Very Long Instruction Word (VLIW) processors are a popular choice in embedded domain due to their hardware simplicity, low cost and low power consumption. Simultaneous MultiThreadi...
Manoj Gupta, Fermín Sánchez, Josep L...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
13 years 5 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
HPDC
1998
IEEE
13 years 12 months ago
Distant I/O: One-Sided Access to Secondary Storage on Remote Processors
We propose a new parallel, noncollective I/O strategy called Distant I/O that targets clustered computer systems in which disks are attached to compute nodes. Distant I/O allows o...
Jarek Nieplocha, Ian T. Foster, Holger Dachsel