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BMCBI
2010
139views more  BMCBI 2010»
13 years 7 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler
ISPA
2005
Springer
14 years 1 months ago
Reducing the Overhead of Intra-Node Communication in Clusters of SMPs
Abstract. This article presents the C++ library vShark which reduces the intranode communication overhead of parallel programs on clusters of SMPs. The library is built on top of m...
Sascha Hunold, Thomas Rauber
DATAMINE
1999
140views more  DATAMINE 1999»
13 years 7 months ago
A Scalable Parallel Algorithm for Self-Organizing Maps with Applications to Sparse Data Mining Problems
Abstract. We describe a scalable parallel implementation of the self organizing map (SOM) suitable for datamining applications involving clustering or segmentation against large da...
Richard D. Lawrence, George S. Almasi, Holly E. Ru...
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
14 years 1 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
HIPS
1998
IEEE
14 years 1 days ago
Parallel and Distributed Programming with Pthreads and Rthreads
This paper describes Rthreads (Remote threads), a software distributed shared memory system that supports sharing of global variables on clusters of computers with physically dist...
Bernd Dreier, Markus Zahn, Theo Ungerer