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» Creating Annotation Tools with the Annotation Graph Toolkit
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BMCBI
2007
133views more  BMCBI 2007»
13 years 7 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja
OSDI
2006
ACM
14 years 7 months ago
From Uncertainty to Belief: Inferring the Specification Within
Automatic tools for finding software errors require a set of specifications before they can check code: if they do not know what to check, they cannot find bugs. This paper presen...
Ted Kremenek, Paul Twohey, Godmar Back, Andrew Y. ...
NAR
2008
159views more  NAR 2008»
13 years 7 months ago
The UCSC Genome Browser Database: 2008 update
The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism ge...
Donna Karolchik, Robert M. Kuhn, Robert Baertsch, ...
KDD
2002
ACM
184views Data Mining» more  KDD 2002»
14 years 7 months ago
The Community of Multimedia Agents
Multimedia data mining requires the ability to automatically analyze and understand the content. The Community of Multimedia Agents project is devoted to creating a community of re...
Gang Wei, Valery A. Petrushin, Anatole Gershman
KDD
2006
ACM
157views Data Mining» more  KDD 2006»
14 years 7 months ago
Using structure indices for efficient approximation of network properties
Statistics on networks have become vital to the study of relational data drawn from areas such as bibliometrics, fraud detection, bioinformatics, and the Internet. Calculating man...
Matthew J. Rattigan, Marc Maier, David Jensen