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» Creating a Protein Ontology Resource
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COOPIS
2002
IEEE
14 years 20 days ago
Formal Ontology Engineering in the DOGMA Approach
This paper presents a specifically database-inspired approach (called DOGMA) for engineering formal ontologies, implemented as shared resources used to express agreed formal semant...
Mustafa Jarrar, Robert Meersman
NAR
2011
233views Computer Vision» more  NAR 2011»
12 years 10 months ago
ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures
ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms....
Volker Herzig, David L. A. Wood, Felicity Newell, ...
BMCBI
2008
141views more  BMCBI 2008»
13 years 7 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...
WISE
2007
Springer
14 years 1 months ago
Mapping Metadata for SWHi: Aligning Schemas with Library Metadata for a Historical Ontology
What are the possibilities of Semantic Web technologies for organizations which traditionally have lots of structured data, such as metadata, available? A library is such a particu...
Junte Zhang, Ismail Fahmi, Henk Ellermann, Gosse B...
BMCBI
2006
120views more  BMCBI 2006»
13 years 7 months ago
Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
Michael E. Bradley, Steven A. Benner