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» Cross-Platform Analysis with Binarized Gene Expression Data
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BMCBI
2010
112views more  BMCBI 2010»
13 years 8 months ago
Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships
Background: The large amount of high-throughput genomic data has facilitated the discovery of the regulatory relationships between transcription factors and their target genes. Wh...
Junhee Seok, Amit Kaushal, Ronald W. Davis, Wenzho...
BMCBI
2007
113views more  BMCBI 2007»
13 years 8 months ago
CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks
Background: Detailed information on DNA-binding transcription factors (the key players in the regulation of gene expression) and on transcriptional regulatory interactions of micr...
Jan Baumbach
BIOADIT
2004
Springer
14 years 1 months ago
Analysis of Responses of Complex Bionetworks to Changes in Environmental Conditions
Abstract. The responses of flexible bionetworks to extreme environmental changes were studied in several microorganisms. Gene and metabolic networks markedly changed with osmotic ...
Hiroshi Shimizu, Takashi Hirasawa, Keisuke Nagahis...
BMCBI
2008
121views more  BMCBI 2008»
13 years 8 months ago
Microarray data mining using landmark gene-guided clustering
Background: Clustering is a popular data exploration technique widely used in microarray data analysis. Most conventional clustering algorithms, however, generate only one set of ...
Pankaj Chopra, Jaewoo Kang, Jiong Yang, HyungJun C...
BMCBI
2008
163views more  BMCBI 2008»
13 years 8 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig