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» Cross-Platform Analysis with Binarized Gene Expression Data
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BMCBI
2006
374views more  BMCBI 2006»
13 years 8 months ago
AMDA: an R package for the automated microarray data analysis
Background: Microarrays are routinely used to assess mRNA transcript levels on a genome-wide scale. Large amount of microarray datasets are now available in several databases, and...
Mattia Pelizzola, Norman Pavelka, Maria Foti, Paol...
JMLR
2006
79views more  JMLR 2006»
13 years 8 months ago
Estimation of Gradients and Coordinate Covariation in Classification
We introduce an algorithm that simultaneously estimates a classification function as well as its gradient in the supervised learning framework. The motivation for the algorithm is...
Sayan Mukherjee, Qiang Wu
JMLR
2006
97views more  JMLR 2006»
13 years 8 months ago
Learning Coordinate Covariances via Gradients
We introduce an algorithm that learns gradients from samples in the supervised learning framework. An error analysis is given for the convergence of the gradient estimated by the ...
Sayan Mukherjee, Ding-Xuan Zhou
GECCO
2004
Springer
164views Optimization» more  GECCO 2004»
14 years 1 months ago
Fuzzy Dominance Based Multi-objective GA-Simplex Hybrid Algorithms Applied to Gene Network Models
Hybrid algorithms that combine genetic algorithms with the Nelder-Mead simplex algorithm have been effective in solving certain optimization problems. In this article, we apply a s...
Praveen Koduru, Sanjoy Das, Stephen Welch, Judith ...
BMCBI
2005
137views more  BMCBI 2005»
13 years 8 months ago
ArrayQuest: a web resource for the analysis of DNA microarray data
Background: Numerous microarray analysis programs have been created through the efforts of Open Source software development projects. Providing browser-based interfaces that allow...
Gary L. Argraves, Saurin D. Jani, Jeremy L. Barth,...