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    BMCBI
    2007
    146views more  BMCBI 2007»
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    13 years 6 months ago
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
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    Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
    Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
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    CONCUR
    2005
    Springer
    115views Distributed And Parallel Com...» more  CONCUR 2005»
    A Compositional Approach to the Stochastic Dynamics of Gene Networks
    14 years 8 days ago
    A Compositional Approach to the Stochastic Dynamics of Gene Networks
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    We propose a compositional approach to the dynamics of gene regulatory networks based on the stochastic π-calculus, and develop a representation of gene network elements which can...
    Luca Cardelli
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    BMCBI
    2006
    123views more  BMCBI 2006»
    Characterizing disease states from topological properties of transcriptional regulatory networks
    13 years 6 months ago
    Characterizing disease states from topological properties of transcriptional regulatory networks
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    Background: High throughput gene expression experiments yield large amounts of data that can augment our understanding of disease processes, in addition to classifying samples. He...
    David Tuck, Harriet Kluger, Yuval Kluger
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    BMCBI
    2004
    146views more  BMCBI 2004»
    Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
    13 years 6 months ago
    Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
    Download  www.biomedcentral.com
    Background: Functional genomics studies are yielding information about regulatory processes in the cell at an unprecedented scale. In the yeast S. cerevisiae, DNA microarrays have...
    Feng Gao, Barrett C. Foat, Harmen J. Bussemaker
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    CANDC
    2004
    ACM
    98views Emerging Technology» more  CANDC 2004»
    The difficult interpretation of transcriptome data: the case of the GATC regulatory network
    13 years 6 months ago
    The difficult interpretation of transcriptome data: the case of the GATC regulatory network
    Download  karchinlab.org
    Genomic analyses on part of Escherichia coli's chromosome had suggested the existence of a GATC regulated network. This has recently been confirmed through a transcriptome an...
    Alessandra Riva, Marie-Odile Delorme, Tony Chevali...
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