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» Current approaches to gene regulatory network modelling
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BMCBI
2007
148views more  BMCBI 2007»
13 years 8 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
CMSB
2007
Springer
14 years 2 months ago
Context Sensitivity in Logical Modeling with Time Delays
For modeling and analyzing regulatory networks based on qualitative information and possibly additional temporal constraints, approaches using hybrid automata can be very helpful. ...
Heike Siebert, Alexander Bockmayr
IWANN
2001
Springer
14 years 27 days ago
Neuronal Models with Current Inputs
We propose a novel approach based upon a superposition of ‘colored’ and ‘white’ noise to approximate current inputs in neural models. Numerical results show that the novel ...
Jianfeng Feng
BMCBI
2008
98views more  BMCBI 2008»
13 years 8 months ago
MTAP: The Motif Tool Assessment Platform
Background: In recent years, substantial effort has been applied to de novo regulatory motif discovery. At this time, more than 150 software tools exist to detect regulatory bindi...
Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah...
BMCBI
2006
120views more  BMCBI 2006»
13 years 8 months ago
An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse
Background: Many statistical algorithms combine microarray expression data and genome sequence data to identify transcription factor binding motifs in the low eukaryotic genomes. ...
Ryung S. Kim, Hongkai Ji, Wing Hung Wong