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» DEPD: a novel database for differentially expressed proteins
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KDD
2005
ACM
91views Data Mining» more  KDD 2005»
14 years 9 months ago
On mining cross-graph quasi-cliques
Joint mining of multiple data sets can often discover interesting, novel, and reliable patterns which cannot be obtained solely from any single source. For example, in cross-marke...
Jian Pei, Daxin Jiang, Aidong Zhang
BMCBI
2006
146views more  BMCBI 2006»
13 years 8 months ago
A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls
Background: Statistical comparison of peptide profiles in biomarker discovery requires fast, userfriendly software for high throughput data analysis. Important features are flexib...
Mark K. Titulaer, Ivar Siccama, Lennard J. Dekker,...
BMCBI
2006
124views more  BMCBI 2006»
13 years 8 months ago
HybGFS: a hybrid method for genome-fingerprint scanning
Background: Protein identification based on mass spectrometry (MS) has previously been performed using peptide mass fingerprinting (PMF) or tandem MS (MS/MS) database searching. H...
Kosaku Shinoda, Nozomu Yachie, Takeshi Masuda, Nao...
WWW
2007
ACM
14 years 9 months ago
SPARQ2L: towards support for subgraph extraction queries in rdf databases
Many applications in analytical domains often have the need to "connect the dots" i.e., query about the structure of data. In bioinformatics for example, it is typical t...
Kemafor Anyanwu, Angela Maduko, Amit P. Sheth
JCB
2006
107views more  JCB 2006»
13 years 8 months ago
Protein Image Alignment via Piecewise Affine Transformations
Abstract We present a new approach for aligning families of 2D gels. Instead of choosing one of the gels as reference and performing pairwise alignment, we construct an ideal gel t...
Florian A. Potra, Xing Liu, Françoise Seill...