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BMCBI
2010
135views more  BMCBI 2010»
13 years 9 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
INFOCOM
1998
IEEE
14 years 1 months ago
Design of Logical Topologies: A Linear Formulation for Wavelength Routed Optical Networks with No Wavelength Changers
We consider the problem of constructing logical topologies over a wavelength-routed optical network with no wavelength changers. We present a general linear formulation which consi...
Rajesh M. Krishnaswamy, Kumar N. Sivarajan
GECCO
2008
Springer
186views Optimization» more  GECCO 2008»
13 years 10 months ago
A pareto following variation operator for fast-converging multiobjective evolutionary algorithms
One of the major difficulties when applying Multiobjective Evolutionary Algorithms (MOEA) to real world problems is the large number of objective function evaluations. Approximate...
A. K. M. Khaled Ahsan Talukder, Michael Kirley, Ra...
BMCBI
2008
211views more  BMCBI 2008»
13 years 9 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
APBC
2004
173views Bioinformatics» more  APBC 2004»
13 years 10 months ago
RNA Secondary Structure Prediction with Simple Pseudoknots
Pseudoknots are widely occurring structural motifs in RNA. Pseudoknots have been shown to be functionally important in different RNAs which play regulatory, catalytic, or structur...
Jitender S. Deogun, Ruben Donts, Olga Komina, Fang...