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BMCBI
2006
122views more  BMCBI 2006»
13 years 11 months ago
Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle
Background: A transcriptional regulatory module (TRM) is a set of genes that is regulated by a common set of transcription factors (TFs). By organizing the genome into TRMs, a liv...
Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen
RECOMB
2004
Springer
14 years 11 months ago
Computational identification of evolutionarily conserved exons
Phylogenetic hidden Markov models (phylo-HMMs) have recently been proposed as a means for addressing a multispecies version of the ab initio gene prediction problem. These models ...
Adam C. Siepel, David Haussler
BMCBI
2005
120views more  BMCBI 2005»
13 years 10 months ago
Harshlight: a "corrective make-up" program for microarray chips
Background: Microscopists are familiar with many blemishes that fluorescence images can have due to dust and debris, glass flaws, uneven distribution of fluids or surface coatings...
Mayte Suárez-Fariñas, Maurizio Pelle...
BMCBI
2006
107views more  BMCBI 2006»
13 years 11 months ago
CROPPER: a metagene creator resource for cross-platform and cross-species compendium studies
Background: Current genomic research methods provide researchers with enormous amounts of data. Combining data from different high-throughput research technologies commonly availa...
Jussi Paananen, Markus Storvik, Garry Wong
ICSE
2008
IEEE-ACM
14 years 11 months ago
Precise memory leak detection for java software using container profiling
A memory leak in a Java program occurs when object references that are no longer needed are unnecessarily maintained. Such leaks are difficult to understand because static analyse...
Guoqing Xu, Atanas Rountev