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» DIP: the Database of Interacting Proteins
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ICDM
2006
IEEE
132views Data Mining» more  ICDM 2006»
14 years 1 months ago
Mining for Tree-Query Associations in a Graph
New applications of data mining, such as in biology, bioinformatics, or sociology, are faced with large datasets structured as graphs. We present an efficient algorithm for minin...
Eveline Hoekx, Jan Van den Bussche
BMCBI
2010
118views more  BMCBI 2010»
13 years 7 months ago
Walk-weighted subsequence kernels for protein-protein interaction extraction
Background: The construction of interaction networks between proteins is central to understanding the underlying biological processes. However, since many useful relations are exc...
Seonho Kim, Juntae Yoon, Jihoon Yang, Seog Park
BMCBI
2006
195views more  BMCBI 2006»
13 years 7 months ago
Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities
Background: Existing biological databases support a variety of queries such as keyword or definition search. However, they do not provide any measure of relevance for the instance...
Paul Shafer, Timothy Isganitis, Golan Yona
BMCBI
2005
141views more  BMCBI 2005»
13 years 7 months ago
A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models
Background: G- Protein coupled receptors (GPCRs) comprise the largest group of eukaryotic cell surface receptors with great pharmacological interest. A broad range of native ligan...
Nikolaos G. Sgourakis, Pantelis G. Bagos, Panagiot...
KDD
2005
ACM
104views Data Mining» more  KDD 2005»
14 years 7 months ago
Mining tree queries in a graph
We present an algorithm for mining tree-shaped patterns in a large graph. Novel about our class of patterns is that they can contain constants, and can contain existential nodes w...
Bart Goethals, Eveline Hoekx, Jan Van den Bussche