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» DNA Computing Based on Splicing: Universality Results
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GECCO
1999
Springer
13 years 12 months ago
Reaction Temperature Constraints in DNA Computing
Using the thermodynamics of DNA melting, a technique is proposed to choose a reaction temperature for the DNA computation that minimizes the potential for mishybridizations. Adlem...
Russell J. Deaton
BMCBI
2005
143views more  BMCBI 2005»
13 years 7 months ago
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
Background: In expressed sequence tag (EST) sequencing, we are often interested in how many genes we can capture in an EST sample of a targeted size. This information provides ins...
Ji-Ping Z. Wang, Bruce G. Lindsay 0002, Liying Cui...
ALMOB
2008
95views more  ALMOB 2008»
13 years 7 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen
ICNC
2005
Springer
14 years 1 months ago
DNA Computing Approach to Construction of Semantic Model
In this paper, after a new DNA-based semantic model is theoretically proposed, the preliminary experiment on construction of the small test model is successfully done. This model, ...
Yusei Tsuboi, Zuwairie Ibrahim, Nobuyuki Kasai, Os...
BMCBI
2010
121views more  BMCBI 2010»
13 years 5 months ago
Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites
Background: DNA instability profiles have been used recently for predicting the transcriptional start site and the location of core promoters, and to gain insight into promoter ac...
Miriam R. Kantorovitz, Zoi Rapti, Vladimir Gelev, ...