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DNA
2004
Springer
14 years 1 months ago
Parallelism in Gene Assembly
The process of gene assembly in ciliates, an ancient group of organisms, is one of the most complex instances of DNA manipulation known in any organisms. This process is fascinatin...
Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenber...
DNA
2004
Springer
14 years 1 months ago
Efficient Initial Pool Generation for Weighted Graph Problems Using Parallel Overlap Assembly
Most DNA computing algorithms for mathematical problems start with combinatorial generation of an initial pool. Several methods for initialpool generation have been proposed, inclu...
Ji Youn Lee, Hee-Woong Lim, Suk-In Yoo, Byoung-Tak...
TCS
2008
13 years 8 months ago
Detection of subtle variations as consensus motifs
We address the problem of detecting consensus motifs, that occur with subtle variations, across multiple sequences. These are usually functional domains in DNA sequences such as t...
Matteo Comin, Laxmi Parida
BMCBI
2011
12 years 11 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
NAR
2011
212views Computer Vision» more  NAR 2011»
12 years 11 months ago
The Sequence Read Archive
The combination of significantly lower cost and increased speed of sequencing has resulted in an explosive growth of data submitted into the primary next-generation sequence data ...
Rasko Leinonen, Hideaki Sugawara, Martin Shumway